In the script for The Origin of Dr. Viper, the Reflex Room had additional rooms, traps and weapons for the SWAT Kats to dodge, and the target range portion included a cardboard cutout of the Pastmaster, placing the episode after the events of The Pastmaster Always Rings Twice.
The Reflex Room returns in the unfinished episode Turmoil 2: The Revenge, where a new feature is added in which the SWAT Kats fight a “laser saucer” in a holographic environment resembling a desert. The rebuilt Cybertron, not realizing it’s only a training session, thinks that his friends are being attacked for real and busts through the wall and destroys the saucer, much to T-Bone’s annoyance.